PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011459.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 361aa    MW: 38973 Da    PI: 9.576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011459.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11118162132
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............... CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.............k 32 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P+++             +
  Do011459.1 118 QRMTHIAVERNRRKQMNEYLAVLRSLMPSSYaqrvnqrairshaR 162
                 79***************************8445555555555550 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-13115205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-10115205No hitNo description
SuperFamilySSF474592.86E-13116145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.687117200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-8118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-7123206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.86E-13180217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MALEAVVLFQ QQQGRSRFGC GAMAGGPWSG LFGGVEGLVE LSGAGAGSWE AAARPSSMPL  60
LHGFQELDNT PAAVVPPVDS GGSVGPEAAA LTTTPVPSVR RKRRRARAVK NKEEEESQRM  120
THIAVERNRR KQMNEYLAVL RSLMPSSYAQ RVNQRAIRSH ARPPSNPSST TRELSARRRV  180
CVQGDQASIV GGAINFVKEL EQLLQSLEAR RRSAQRPAGV DAAPFAGFFT FPQYSMRAAA  240
TAAPENAPAD ATHREGAEAE DASGSKPSAV ADVEATMVES HANLRVLSRR RPRQLLRLVV  300
GLHGHRLTVL HLNMSSAGQM VLYSFSLKVD DDCQLTSVDE IAAATHQIVE KIHQEQGCSL  360
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104RKRRR
2118129RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957080.11e-149PREDICTED: transcription factor bHLH94-like
TrEMBLA0A096R8X51e-109A0A096R8X5_MAIZE; Uncharacterized protein
STRINGGRMZM2G082586_P011e-109(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-52bHLH family protein